No. words: 1480; after pruning: 1440


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:611)  593  0.00 0.00 0.49  MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1        1   614 (152)  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1   (103)   611     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1   714 
  107    MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1     4 
  207  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1   508 
  211    MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1   108 
  531  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1   184 
  583    MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1   480 
  587  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1   128 
  603    MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1   500 
  611  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1   104 
  667    MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1   564 
  676  C MoSU008R_G02_BE590476Ld10P005C01C071R1_004.ab1    40 
  688    MoSU008F_G02_BE590476Ld10P005C01C071F1_004.ab1   585 
Contig length: old 868, new 869

Contig length: old 869, new 869
New start: 0 
S Change at: 810; seg lengths: entry 1, contig 1