No. words: 1116; after pruning: 1090


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:511)  499  0.00 0.00 0.39  MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1        1   513 (42)  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   (50)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   561 
   78    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1    28 
   86  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   476 
  122    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1    72 
  130  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   432 
  190    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1   140 
  262  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   300 
  278    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1   228 
  302  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   260 
  310    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1   260 
  314  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   248 
  326    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1   276 
  414  C MoSU028R_C03_BE590476Sn29P030C01P005C071R1_027.ab1   148 
  426    MoSU028F_C03_BE590476Sn29P030C01P005C071F1_027.ab1   376 
Contig length: old 604, new 605

Contig length: old 605, new 605
New start: 0