No. words: 1145; after pruning: 1119


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.4 (1,1:526)  494  0.00 0.38 0.76  MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1        4   529 (40)  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1   (52)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1   576 
  164    MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1   114 
  192  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1   385 
  196    MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1   146 
  344  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1   233 
  352    MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1   302 
  408  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1   169 
  420    MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1   370 
  456  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1   121 
  464    MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1   414 
  496  C MoSU028R_B07_BE590476Sn30P030A01P005C071R1_061.ab1    81 
  512    MoSU028F_B07_BE590476Sn30P030A01P005C071F1_061.ab1   462 
Contig length: old 618, new 619

Contig length: old 619, new 619
New start: 0