No. words: 1116; after pruning: 1076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:509)  485  1.18 0.20 0.00  MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1        1   510 (56)  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   (39)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   550 
   78    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1    38 
   90  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   461 
   94    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1    54 
  106  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   445 
  110    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1    70 
  182  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   369 
  186    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1   146 
  202  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   349 
  222    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1   182 
  302  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   249 
  310    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1   270 
  318  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   233 
  338    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1   298 
  358  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   193 
  378    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1   338 
  414  C MoSU028R_D03_BE590476Sn30P030C01P005C071R1_025.ab1   137 
  426    MoSU028F_D03_BE590476Sn30P030C01P005C071F1_025.ab1   386 
Contig length: old 606, new 606

Contig length: old 606, new 606
New start: 0