No. words: 1128; after pruning: 1102


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.3 (1,1:523)  492  0.00 0.38 0.76  MoSU028F_C07_BE590476Sn31P030A01P005C071F1_059.ab1        4   527 (41)  C MoSU028R_C07_BE590476Sn31P030A01P005C071R1_059.ab1   (38)   522     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU028R_C07_BE590476Sn31P030A01P005C071R1_059.ab1   560 
  415    MoSU028F_C07_BE590476Sn31P030A01P005C071F1_059.ab1   378 
  419  C MoSU028R_C07_BE590476Sn31P030A01P005C071R1_059.ab1   142 
  533    MoSU028F_C07_BE590476Sn31P030A01P005C071F1_059.ab1   497 
Contig length: old 604, new 604

Contig length: old 604, new 605
New start: 0 
I Change at: 519; seg lengths: entry 1, contig 0