No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.5 (1,1:538)  532  0.00 0.00 0.00  MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1        3   539 (40)  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   (21)   537     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   558 
  105    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1    86 
  109  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   450 
  121    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1   102 
  125  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   434 
  129    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1   110 
  133  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   426 
  201    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1   182 
  205  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   354 
  213    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1   194 
  241  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   318 
  245    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1   226 
  321  C MoSU025R_C02_BE590476Ta11P030A01P005C071R1_012.ab1   238 
  333    MoSU025F_C02_BE590476Ta11P030A01P005C071F1_012.ab1   314 
Contig length: old 598, new 598

Contig length: old 598, new 598
New start: 0