No. words: 1118; after pruning: 1078


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.8 (1,1:508)  500  0.20 0.00 0.00  MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1        4   509 (51)  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   (52)   506     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   558 
   84    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1    35 
   96  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   463 
  100    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1    51 
  112  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   447 
  116    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1    67 
  120  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   439 
  124    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1    75 
  148  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   411 
  236    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1   187 
  264  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   295 
  316    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1   267 
  324  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   235 
  332    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1   283 
  336  C MoSU028R_A01_BE590476Ta11P030C01P005C071R1_015.ab1   223 
  384    MoSU028F_A01_BE590476Ta11P030C01P005C071F1_015.ab1   335 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0