No. words: 1123; after pruning: 1097


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.8 (1,1:520)  505  0.19 0.00 0.19  MoSU028F_C01_BE590476Ta13P030C01P005C071F1_011.ab1        5   521 (41)  C MoSU028R_C01_BE590476Ta13P030C01P005C071R1_011.ab1   (45)   516     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C MoSU028R_C01_BE590476Ta13P030C01P005C071R1_011.ab1   561 
   77    MoSU028F_C01_BE590476Ta13P030C01P005C071F1_011.ab1    36 
   85  C MoSU028R_C01_BE590476Ta13P030C01P005C071R1_011.ab1   477 
  102    MoSU028F_C01_BE590476Ta13P030C01P005C071F1_011.ab1    61 
  106  C MoSU028R_C01_BE590476Ta13P030C01P005C071R1_011.ab1   456 
  118    MoSU028F_C01_BE590476Ta13P030C01P005C071F1_011.ab1    77 
  286  C MoSU028R_C01_BE590476Ta13P030C01P005C071R1_011.ab1   276 
  306    MoSU028F_C01_BE590476Ta13P030C01P005C071F1_011.ab1   265 
  318  C MoSU028R_C01_BE590476Ta13P030C01P005C071R1_011.ab1   244 
  326    MoSU028F_C01_BE590476Ta13P030C01P005C071F1_011.ab1   285 
Contig length: old 602, new 603

Contig length: old 603, new 603
New start: 0