No. words: 1121; after pruning: 1095


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:520)  508  0.00 0.19 0.19  MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1        1   521 (42)  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   (37)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   558 
   75    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1    37 
   83  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   476 
  115    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1    77 
  127  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   432 
  143    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   105 
  195  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   364 
  215    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   177 
  235  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   324 
  239    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   201 
  255  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   304 
  267    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   229 
  299  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   260 
  303    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   265 
  327  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1   232 
  359    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   321 
  507  C MoSU028R_E01_BE590476Ta15P030C01P005C071R1_007.ab1    52 
  511    MoSU028F_E01_BE590476Ta15P030C01P005C071F1_007.ab1   473 
Contig length: old 600, new 601

Contig length: old 601, new 601
New start: 0