No. words: 1315; after pruning: 1262


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.0 (1,1:510)  460  2.15 0.00 0.59  MoSU025F_H02_BE590476Ta16P030A01P005C071F1_002.ab1        1   512 (246)  C MoSU025R_H02_BE590476Ta16P030A01P005C071R1_002.ab1   (48)   509     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C MoSU025R_H02_BE590476Ta16P030A01P005C071R1_002.ab1   557 
  529    MoSU025F_H02_BE590476Ta16P030A01P005C071F1_002.ab1   483 
Contig length: old 804, new 804

Contig length: old 804, new 804
New start: 0 
S Change at: 614; seg lengths: entry 1, contig 1
S Change at: 619; seg lengths: entry 1, contig 1
S Change at: 626; seg lengths: entry 2, contig 2