No. words: 1123; after pruning: 1083


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.4 (1,1:519)  503  0.39 0.00 0.19  MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1        5   520 (41)  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   (47)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   562 
   67    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1    24 
   71  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   492 
   79    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1    36 
   96  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   467 
  100    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1    57 
  108  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   455 
  176    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1   133 
  196  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   367 
  224    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1   181 
  240  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   323 
  244    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1   201 
  252  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   311 
  276    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1   233 
  284  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   279 
  312    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1   269 
  316  C MoSU028R_A02_BE590476Ta19P030C01P005C071R1_016.ab1   247 
  380    MoSU028F_A02_BE590476Ta19P030C01P005C071F1_016.ab1   337 
Contig length: old 603, new 604

Contig length: old 604, new 604
New start: 0 
S Change at: 91; seg lengths: entry 1, contig 1