No. words: 1125; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:509)  496  0.00 0.20 0.20  MoSU028F_C02_BE590476Ta21P030C01P005C071F1_012.ab1        1   510 (53)  C MoSU028R_C02_BE590476Ta21P030C01P005C071R1_012.ab1   (52)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C MoSU028R_C02_BE590476Ta21P030C01P005C071R1_012.ab1   562 
  130    MoSU028F_C02_BE590476Ta21P030C01P005C071F1_012.ab1    77 
  142  C MoSU028R_C02_BE590476Ta21P030C01P005C071R1_012.ab1   421 
  210    MoSU028F_C02_BE590476Ta21P030C01P005C071F1_012.ab1   157 
  306  C MoSU028R_C02_BE590476Ta21P030C01P005C071R1_012.ab1   257 
  310    MoSU028F_C02_BE590476Ta21P030C01P005C071F1_012.ab1   257 
  318  C MoSU028R_C02_BE590476Ta21P030C01P005C071R1_012.ab1   245 
  322    MoSU028F_C02_BE590476Ta21P030C01P005C071F1_012.ab1   269 
  338  C MoSU028R_C02_BE590476Ta21P030C01P005C071R1_012.ab1   225 
  390    MoSU028F_C02_BE590476Ta21P030C01P005C071F1_012.ab1   337 
Contig length: old 615, new 616

Contig length: old 616, new 616
New start: 0