No. words: 1139; after pruning: 1113


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:536)  527  0.00 0.00 0.19  MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1        1   537 (39)  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   (27)   536     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   563 
   59    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1    32 
   71  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   493 
   75    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1    48 
   83  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   481 
   91    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1    64 
  103  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   461 
  107    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1    80 
  111  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   453 
  119    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1    92 
  139  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   425 
  151    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1   124 
  159  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   405 
  167    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1   140 
  175  C MoSU025R_A01_BE590476Td01P030A01P005C071R1_015.ab1   389 
  191    MoSU025F_A01_BE590476Td01P030A01P005C071F1_015.ab1   164 
Contig length: old 602, new 603

Contig length: old 603, new 603
New start: 0