No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:535)  514  0.56 0.19 0.19  MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1        1   536 (39)  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   (27)   536     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   563 
   35    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1     8 
   39  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   525 
   63    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1    35 
   71  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   493 
  105    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1    77 
  109  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   455 
  113    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1    85 
  117  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   447 
  157    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1   129 
  225  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   339 
  229    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1   201 
  281  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   283 
  285    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1   257 
  329  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1   235 
  333    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1   305 
  485  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1    79 
  493    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1   465 
  505  C MoSU025R_B01_BE590476Td02P030A01P005C071R1_013.ab1    59 
  513    MoSU025F_B01_BE590476Td02P030A01P005C071F1_013.ab1   485 
Contig length: old 602, new 603

Contig length: old 603, new 603
New start: 0