No. words: 1126; after pruning: 1100


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:528)  508  0.00 0.38 0.38  MoSU025F_A02_BE590476Td09P030A01P005C071F1_016.ab1        1   530 (40)  C MoSU025R_A02_BE590476Td09P030A01P005C071R1_016.ab1   (26)   530     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C MoSU025R_A02_BE590476Td09P030A01P005C071R1_016.ab1   556 
  127    MoSU025F_A02_BE590476Td09P030A01P005C071F1_016.ab1    99 
  135  C MoSU025R_A02_BE590476Td09P030A01P005C071R1_016.ab1   422 
  163    MoSU025F_A02_BE590476Td09P030A01P005C071F1_016.ab1   135 
  191  C MoSU025R_A02_BE590476Td09P030A01P005C071R1_016.ab1   366 
  211    MoSU025F_A02_BE590476Td09P030A01P005C071F1_016.ab1   183 
  323  C MoSU025R_A02_BE590476Td09P030A01P005C071R1_016.ab1   234 
  331    MoSU025F_A02_BE590476Td09P030A01P005C071F1_016.ab1   303 
Contig length: old 597, new 598

Contig length: old 598, new 598
New start: 0