No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:535)  522  0.00 0.00 0.37  MoSU025F_B02_BE590476Td10P030A01P005C071F1_014.ab1        1   537 (39)  C MoSU025R_B02_BE590476Td10P030A01P005C071R1_014.ab1   (21)   535     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C MoSU025R_B02_BE590476Td10P030A01P005C071R1_014.ab1   556 
   49    MoSU025F_B02_BE590476Td10P030A01P005C071F1_014.ab1    28 
  101  C MoSU025R_B02_BE590476Td10P030A01P005C071R1_014.ab1   456 
  105    MoSU025F_B02_BE590476Td10P030A01P005C071F1_014.ab1    84 
  133  C MoSU025R_B02_BE590476Td10P030A01P005C071R1_014.ab1   424 
  137    MoSU025F_B02_BE590476Td10P030A01P005C071F1_014.ab1   116 
  153  C MoSU025R_B02_BE590476Td10P030A01P005C071R1_014.ab1   404 
  161    MoSU025F_B02_BE590476Td10P030A01P005C071F1_014.ab1   140 
Contig length: old 596, new 597

Contig length: old 597, new 597
New start: 0