No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:612)  605  0.00 0.00 0.00  MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1        1   613 (46)  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   (48)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   661 
   60    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1    12 
   68  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   594 
   72    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1    24 
  156  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   506 
  164    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1   116 
  320  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   342 
  324    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1   276 
  400  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   262 
  408    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1   360 
  436  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   226 
  448    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1   400 
  456  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1   206 
  620    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1   572 
  628  C MoSU008R_A01_BE590476Tu01P005C01C071R1_015.ab1    34 
  644    MoSU008F_A01_BE590476Tu01P005C01C071F1_015.ab1   596 
Contig length: old 707, new 707

Contig length: old 707, new 707
New start: 0