No. words: 1332; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:621)  606  0.16 0.00 0.16  MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1        1   622 (40)  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   (49)   621     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   670 
   93    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1    44 
  121  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   550 
  141    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1    92 
  145  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   526 
  149    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   100 
  157  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   514 
  161    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   112 
  209  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   462 
  221    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   172 
  401  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   270 
  409    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   360 
  437  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   234 
  449    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   400 
  465  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   206 
  489    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   440 
  553  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1   118 
  557    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   508 
  581  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1    90 
  601    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   552 
  613  C MoSU008R_B01_BE590476Tu02P005C01C071R1_013.ab1    58 
  617    MoSU008F_B01_BE590476Tu02P005C01C071F1_013.ab1   568 
Contig length: old 710, new 711

Contig length: old 711, new 711
New start: 0