No. words: 1143; after pruning: 1117


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.9 (1,1:621)  478  1.20 0.00 0.00  MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1        3   500 (0)  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   (23)   620   123 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   643 
   27    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1     6 
   35  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   609 
   53    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1    32 
   65  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   579 
   82    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1    61 
  174  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   470 
  178    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1   157 
  186  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   458 
  190    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1   169 
  202  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   442 
  214    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1   193 
  254  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   390 
  270    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1   249 
  302  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   342 
  306    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1   285 
  310  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   334 
  338    MoSU005F_B03_BE591127As01P015H01H071F1_025.ab1   317 
  342  C MoSU005R_B03_BE591127As01P015H01H071R1_025.ab1   302 
Contig length: old 643, new 643

Contig length: old 643, new 643
New start: 0