No. words: 1260; after pruning: 1234


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:574)  568  0.17 0.00 0.00  MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1        1   575 (58)  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   (52)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   627 
   56    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1     4 
   64  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   564 
   92    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1    40 
  100  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   528 
  104    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1    52 
  112  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   516 
  116    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1    64 
  124  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   504 
  128    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1    76 
  140  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   488 
  148    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1    96 
  164  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   464 
  168    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1   116 
  320  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   308 
  460    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1   408 
  504  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1   124 
  520    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1   468 
  532  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1    96 
  536    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1   484 
  540  C MoSU013R_C07_BE591127As01P018A02P018A081R1_059.ab1    88 
  552    MoSU013F_C07_BE591127As01P018A02P018A081F1_059.ab1   500 
Contig length: old 685, new 685

Contig length: old 685, new 685
New start: 0