No. words: 1315; after pruning: 1289


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.4 (1,1:624)  589  0.97 0.16 0.16  MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1        5   625 (50)  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   (19)   621     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   640 
   49    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1    33 
   65  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   576 
   73    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1    57 
   77  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   564 
   85    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1    69 
  121  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   520 
  129    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   113 
  153  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   488 
  157    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   141 
  181  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   460 
  189    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   173 
  221  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   420 
  225    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   209 
  229  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   412 
  237    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   221 
  241  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   400 
  245    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   229 
  257  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   384 
  265    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   249 
  309  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   332 
  321    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   305 
  362  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   279 
  390    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   374 
  398  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   243 
  434    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   418 
  438  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   203 
  462    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   446 
  470  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   171 
  486    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   470 
  490  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   151 
  498    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   482 
  506  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   135 
  526    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   510 
  538  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1   103 
  542    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   526 
  550  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1    91 
  558    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   542 
  578  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1    63 
  594    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   578 
  602  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1    39 
  606    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   590 
  631  C MoSU005R_D03_BE591127At02P015H01H071R1_026.ab1    11 
  635    MoSU005F_D03_BE591127At02P015H01H071F1_026.ab1   619 
Contig length: old 690, new 691

Contig length: old 691, new 691
New start: 0