No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:604)  587  0.00 0.50 0.00  MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1        1   604 (58)  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   (44)   607     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   651 
   84    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1    37 
   88  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   564 
  136    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1    89 
  140  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   512 
  160    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1   113 
  164  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   488 
  212    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1   165 
  220  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   432 
  508    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1   461 
  536  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1   116 
  540    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1   493 
  564  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1    88 
  572    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1   525 
  580  C MoSU013R_F07_BE591127At02P018A02P018A081R1_053.ab1    72 
  584    MoSU013F_F07_BE591127At02P018A02P018A081F1_053.ab1   537 
Contig length: old 708, new 709

Contig length: old 709, new 709
New start: 0