No. words: 1248; after pruning: 1222


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:617)  580  0.17 0.17 0.17  MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1        1   596 (0)  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   (34)   618    23 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   652 
   47    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1    12 
   67  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   586 
   71    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1    36 
  111  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   542 
  115    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1    80 
  127  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   526 
  139    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   104 
  167  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   486 
  171    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   136 
  219  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   434 
  223    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   188 
  379  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   274 
  475    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   440 
  483  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   170 
  491    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   456 
  499  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1   154 
  559    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   524 
  563  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1    90 
  595    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   560 
  606  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1    47 
  618    MoSU013F_E08_BE591127Ld07P018A02P018A081F1_056.ab1   583 
  626  C MoSU013R_E08_BE591127Ld07P018A02P018A081R1_056.ab1    28 
Contig length: old 652, new 653

Contig length: old 653, new 652
New start: 0 
D Change at: 47; seg lengths: entry 0, contig 1