No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:549)  543  0.18 0.00 0.00  MoSU013F_A07_BE591127Tu01P018A02P018A081F1_063.ab1        1   550 (69)  C MoSU013R_A07_BE591127Tu01P018A02P018A081R1_063.ab1   (67)   550     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU013R_A07_BE591127Tu01P018A02P018A081R1_063.ab1   617 
  500    MoSU013F_A07_BE591127Tu01P018A02P018A081F1_063.ab1   433 
Contig length: old 686, new 686

Contig length: old 686, new 686
New start: 0