No. words: 1537; after pruning: 1497


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:890)  614  0.46 0.15 0.15  MoSU003F_D11_BE591305As02P005A01A071F1_090.ab1      126   771 (0)  C MoSU003R_D11_BE591305As02P005A01A071R1_090.ab1   (0)   766   121 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1    MoSU003F_D11_BE591305As02P005A01A071F1_090.ab1     1 
  382  C MoSU003R_D11_BE591305As02P005A01A071R1_090.ab1   510 
  386    MoSU003F_D11_BE591305As02P005A01A071F1_090.ab1   386 
  394  C MoSU003R_D11_BE591305As02P005A01A071R1_090.ab1   498 
  402    MoSU003F_D11_BE591305As02P005A01A071F1_090.ab1   402 
  406  C MoSU003R_D11_BE591305As02P005A01A071R1_090.ab1   486 
  454    MoSU003F_D11_BE591305As02P005A01A071F1_090.ab1   454 
  458  C MoSU003R_D11_BE591305As02P005A01A071R1_090.ab1   434 
  462    MoSU003F_D11_BE591305As02P005A01A071F1_090.ab1   462 
  470  C MoSU003R_D11_BE591305As02P005A01A071R1_090.ab1   422 
Contig length: old 891, new 891

Contig length: old 891, new 891
New start: 0