No. words: 1009; after pruning: 983


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:444)  430  0.00 0.00 0.00  MoSU003F_E11_BE591305At01P005A01A071F1_083.ab1        1   445 (26)  C MoSU003R_E11_BE591305At01P005A01A071R1_083.ab1   (93)   445     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C MoSU003R_E11_BE591305At01P005A01A071R1_083.ab1   538 
  374    MoSU003F_E11_BE591305At01P005A01A071F1_083.ab1   281 
  386  C MoSU003R_E11_BE591305At01P005A01A071R1_083.ab1   153 
  478    MoSU003F_E11_BE591305At01P005A01A071F1_083.ab1   385 
  486  C MoSU003R_E11_BE591305At01P005A01A071R1_083.ab1    53 
  502    MoSU003F_E11_BE591305At01P005A01A071F1_083.ab1   409 
  506  C MoSU003R_E11_BE591305At01P005A01A071R1_083.ab1    33 
  514    MoSU003F_E11_BE591305At01P005A01A071F1_083.ab1   421 
  518  C MoSU003R_E11_BE591305At01P005A01A071R1_083.ab1    21 
  530    MoSU003F_E11_BE591305At01P005A01A071F1_083.ab1   437 
Contig length: old 564, new 564

Contig length: old 564, new 564
New start: 0