No. words: 1065; after pruning: 1025


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:493)  475  0.00 0.00 0.20  MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1        1   494 (31)  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   (47)   493     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   540 
  172    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   126 
  176  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   365 
  336    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   290 
  340  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   201 
  356    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   310 
  364  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   177 
  376    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   330 
  384  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   157 
  388    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   342 
  396  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   145 
  412    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   366 
  416  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1   125 
  472    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   426 
  476  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1    65 
  484    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   438 
  488  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1    53 
  504    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   458 
  508  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1    33 
  516    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   470 
  520  C MoSU003R_F11_BE591305At02P005A01A071R1_091.ab1    21 
  528    MoSU003F_F11_BE591305At02P005A01A071F1_091.ab1   482 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0