No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:498)  480  0.00 0.00 0.20  MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1        1   499 (131)  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1   (153)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1   651 
  366    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   214 
  370  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1   282 
  426    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   274 
  430  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1   222 
  446    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   294 
  450  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1   202 
  570    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   418 
  574  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1    78 
  590    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   438 
  594  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1    58 
  610    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   458 
  614  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1    38 
  626    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   474 
  630  C MoSU003R_A12_BE591305Ld02P005A01A071R1_085.ab1    22 
  642    MoSU003F_A12_BE591305Ld02P005A01A071F1_085.ab1   490 
Contig length: old 782, new 782

Contig length: old 782, new 782
New start: 0