No. words: 1277; after pruning: 1251


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:489)  472  0.00 0.00 0.20  MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1        1   490 (142)  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1   (156)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1   645 
  360    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   205 
  364  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1   282 
  420    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   265 
  428  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1   218 
  440    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   285 
  444  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1   202 
  480    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   325 
  504  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1   142 
  560    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   405 
  568  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1    78 
  584    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   429 
  588  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1    58 
  600    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   445 
  604  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1    42 
  608    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   453 
  616  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1    30 
  620    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   465 
  624  C MoSU003R_C12_BE591305Ld04P005A01A071R1_086.ab1    22 
  636    MoSU003F_C12_BE591305Ld04P005A01A071F1_086.ab1   481 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0