No. words: 1297; after pruning: 1271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:861)  419  0.00 0.23 0.00  MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1      199   632 (0)  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   (0)   665   231 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1    MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1     1 
  281  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   582 
  285    MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1   285 
  349  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   514 
  357    MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1   357 
  377  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   486 
  409    MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1   409 
  413  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   450 
  417    MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1   417 
  425  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   438 
  457    MoSU003F_E12_BE591305Ld06P005A01A071F1_087.ab1   457 
  461  C MoSU003R_E12_BE591305Ld06P005A01A071R1_087.ab1   402 
Contig length: old 862, new 862

Contig length: old 862, new 862
New start: 0