No. words: 1390; after pruning: 1364


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.6 (1,1:822)  544  0.18 0.18 0.18  MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1      151   716 (0)  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   (0)   674   109 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1     1 
  307  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   517 
  311    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1   311 
  319  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   505 
  331    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1   331 
  335  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   489 
  339    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1   339 
  355  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   469 
  359    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1   359 
  391  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   433 
  395    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1   395 
  399  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   425 
  407    MoSU003F_F12_BE591305Ld07P005A01A071F1_095.ab1   407 
  415  C MoSU003R_F12_BE591305Ld07P005A01A071R1_095.ab1   409 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0