No. words: 1460; after pruning: 1434


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:598)  580  0.00 0.00 0.17  MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1        1   599 (105)  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   (158)   598     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   756 
  250    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1    93 
  254  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   503 
  310    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   153 
  314  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   443 
  318    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   161 
  326  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   431 
  342    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   185 
  358  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   399 
  430    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   273 
  434  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   323 
  494    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   337 
  498  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   259 
  526    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   369 
  530  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   227 
  542    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   385 
  550  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   207 
  602    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   445 
  610  C MoSU003R_G12_BE591305Ld08P005A01A071R1_088.ab1   147 
  750    MoSU003F_G12_BE591305Ld08P005A01A071F1_088.ab1   593 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0