No. words: 461; after pruning: 435


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.0 (1,1:173)  157  0.00 0.00 0.58  MoSU029F_G08_BE591305Sn25P005A01P023H121F1_052.ab1        1   171 (59)  C MoSU029R_G08_BE591305Sn25P005A01P023H121R1_052.ab1   (58)   173     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1  C MoSU029R_G08_BE591305Sn25P005A01P023H121R1_052.ab1   231 
  166    MoSU029F_G08_BE591305Sn25P005A01P023H121F1_052.ab1   108 
  170  C MoSU029R_G08_BE591305Sn25P005A01P023H121R1_052.ab1    62 
  186    MoSU029F_G08_BE591305Sn25P005A01P023H121F1_052.ab1   128 
  194  C MoSU029R_G08_BE591305Sn25P005A01P023H121R1_052.ab1    38 
  198    MoSU029F_G08_BE591305Sn25P005A01P023H121F1_052.ab1   140 
Contig length: old 287, new 288

Contig length: old 288, new 288
New start: 0