No. words: 462; after pruning: 436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 1.4 (1,1:175)  152  0.00 0.00 1.17  MoSU029F_B09_BE591305Sn28P005A01P023H121F1_077.ab1        5   175 (51)  C MoSU029R_B09_BE591305Sn28P005A01P023H121R1_077.ab1   (65)   171     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C MoSU029R_B09_BE591305Sn28P005A01P023H121R1_077.ab1   236 
  145    MoSU029F_B09_BE591305Sn28P005A01P023H121F1_077.ab1    84 
  149  C MoSU029R_B09_BE591305Sn28P005A01P023H121R1_077.ab1    88 
  173    MoSU029F_B09_BE591305Sn28P005A01P023H121F1_077.ab1   112 
  177  C MoSU029R_B09_BE591305Sn28P005A01P023H121R1_077.ab1    60 
  181    MoSU029F_B09_BE591305Sn28P005A01P023H121F1_077.ab1   120 
Contig length: old 286, new 287

Contig length: old 287, new 287
New start: 0