No. words: 461; after pruning: 435


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.0 (1,1:172)  152  0.00 0.59 0.59  MoSU029F_C09_BE591305Sn29P005A01P023H121F1_075.ab1        1   170 (60)  C MoSU029R_C09_BE591305Sn29P005A01P023H121R1_075.ab1   (58)   173     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C MoSU029R_C09_BE591305Sn29P005A01P023H121R1_075.ab1   231 
  146    MoSU029F_C09_BE591305Sn29P005A01P023H121F1_075.ab1    87 
  154  C MoSU029R_C09_BE591305Sn29P005A01P023H121R1_075.ab1    78 
  162    MoSU029F_C09_BE591305Sn29P005A01P023H121F1_075.ab1   103 
  170  C MoSU029R_C09_BE591305Sn29P005A01P023H121R1_075.ab1    62 
  178    MoSU029F_C09_BE591305Sn29P005A01P023H121F1_075.ab1   119 
Contig length: old 288, new 289

Contig length: old 289, new 289
New start: 0