No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:651)  331  0.30 0.00 0.00  MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1      316   652 (57)  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1   (0)   337     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1     1 
  463  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1   190 
  467    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1   467 
  495  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1   158 
  511    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1   511 
  515  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1   138 
  519    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1   519 
  531  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1   122 
  599    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1   599 
  611  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1    42 
  615    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1   615 
  640  C MoSU019R_H09_BE591305Td02P023H11P005A071R1_065.ab1    13 
  648    MoSU019F_H09_BE591305Td02P023H11P005A071F1_065.ab1   648 
Contig length: old 709, new 709

Contig length: old 709, new 709
New start: 0