No. words: 1080; after pruning: 1054


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:662)  364  0.00 0.00 0.00  MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1      296   663 (49)  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1   (0)   368     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1     1 
  531  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1   133 
  559    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1   559 
  563  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1   101 
  571    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1   571 
  579  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1    85 
  603    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1   603 
  611  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1    53 
  623    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1   623 
  631  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1    33 
  635    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1   635 
  643  C MoSU019R_A10_BE591305Td03P023H11P005A071R1_080.ab1    21 
  651    MoSU019F_A10_BE591305Td03P023H11P005A071F1_080.ab1   651 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0