No. words: 1145; after pruning: 1119


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:654)  405  1.17 0.00 0.00  MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1      230   655 (64)  C MoSU019R_B10_BE591305Td04P023H11P005A071R1_078.ab1   (0)   426     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1    MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1     1 
  461  C MoSU019R_B10_BE591305Td04P023H11P005A071R1_078.ab1   195 
  521    MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1   521 
  537  C MoSU019R_B10_BE591305Td04P023H11P005A071R1_078.ab1   119 
  553    MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1   553 
  565  C MoSU019R_B10_BE591305Td04P023H11P005A071R1_078.ab1    91 
  573    MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1   573 
  589  C MoSU019R_B10_BE591305Td04P023H11P005A071R1_078.ab1    67 
  597    MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1   597 
  617  C MoSU019R_B10_BE591305Td04P023H11P005A071R1_078.ab1    39 
  621    MoSU019F_B10_BE591305Td04P023H11P005A071F1_078.ab1   621 
Contig length: old 719, new 719

Contig length: old 719, new 719
New start: 0