No. words: 1081; after pruning: 1055


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:660)  357  0.27 0.00 0.27  MoSU019F_G10_BE591305Td09P023H11P005A071F1_068.ab1      294   662 (51)  C MoSU019R_G10_BE591305Td09P023H11P005A071R1_068.ab1   (0)   368     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1    MoSU019F_G10_BE591305Td09P023H11P005A071F1_068.ab1     1 
  529  C MoSU019R_G10_BE591305Td09P023H11P005A071R1_068.ab1   133 
  573    MoSU019F_G10_BE591305Td09P023H11P005A071F1_068.ab1   573 
  581  C MoSU019R_G10_BE591305Td09P023H11P005A071R1_068.ab1    81 
  625    MoSU019F_G10_BE591305Td09P023H11P005A071F1_068.ab1   625 
  629  C MoSU019R_G10_BE591305Td09P023H11P005A071R1_068.ab1    33 
  637    MoSU019F_G10_BE591305Td09P023H11P005A071F1_068.ab1   637 
Contig length: old 713, new 713

Contig length: old 713, new 713
New start: 0