No. words: 1057; after pruning: 1031


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:493)  475  0.00 0.00 0.20  MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1        1   494 (28)  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   (42)   493     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   535 
  115    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1    74 
  119  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   417 
  203    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   162 
  211  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   325 
  223    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   182 
  231  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   305 
  311    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   270 
  315  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   221 
  327    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   286 
  335  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   201 
  351    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   310 
  355  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   181 
  371    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   330 
  383  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   153 
  391    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   350 
  395  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1   141 
  455    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   414 
  459  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1    77 
  479    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   438 
  483  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1    53 
  499    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   458 
  503  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1    33 
  507    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   466 
  515  C MoSU003R_B11_BE591305Tu02P005A01A071R1_089.ab1    21 
  527    MoSU003F_B11_BE591305Tu02P005A01A071F1_089.ab1   486 
Contig length: old 563, new 563

Contig length: old 563, new 563
New start: 0