No. words: 1605; after pruning: 1579


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.7 (1,1:684)  671  0.00 0.00 0.15  MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1        2   685 (123)  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   (114)   683     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   797 
  138    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1    25 
  214  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   584 
  218    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   105 
  250  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   548 
  254    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   141 
  266  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   532 
  282    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   169 
  306  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   492 
  310    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   197 
  370  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   428 
  374    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   261 
  378  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   420 
  382    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   269 
  414  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   384 
  522    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   409 
  530  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   268 
  534    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   421 
  538  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   260 
  678    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   565 
  682  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1   116 
  770    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   657 
  778  C MoSU002R_C09_BE591737Ld03P005C02C081R2_066.ab1    20 
  786    MoSU002F_C09_BE591737Ld03P005C02C081F2_066.ab1   673 
Contig length: old 920, new 921

Contig length: old 921, new 921
New start: 0