No. words: 404; after pruning: 378


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 1.7 (1,1:157)  137  0.66 0.00 0.66  MoSU020F_H06_BE591996Sn24P020E02P005G071F1_034.ab1        6   156 (41)  C MoSU020R_H06_BE591996Sn24P020E02P005G071R1_034.ab1   (55)   152     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C MoSU020R_H06_BE591996Sn24P020E02P005G071R1_034.ab1   207 
  157    MoSU020F_H06_BE591996Sn24P020E02P005G071F1_034.ab1   108 
  161  C MoSU020R_H06_BE591996Sn24P020E02P005G071R1_034.ab1    47 
  165    MoSU020F_H06_BE591996Sn24P020E02P005G071F1_034.ab1   116 
  177  C MoSU020R_H06_BE591996Sn24P020E02P005G071R1_034.ab1    31 
  181    MoSU020F_H06_BE591996Sn24P020E02P005G071F1_034.ab1   132 
Contig length: old 246, new 246

Contig length: old 246, new 246
New start: 0