No. words: 1297; after pruning: 1271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:663)  593  0.48 0.00 0.16  MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1       45   665 (12)  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   (0)   620     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1     1 
  283  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   382 
  287    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   287 
  291  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   374 
  295    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   295 
  303  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   362 
  307    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   307 
  323  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   342 
  327    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   327 
  343  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   322 
  487    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   487 
  491  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   174 
  515    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   515 
  519  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1   146 
  603    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   603 
  615  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1    50 
  623    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   623 
  631  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1    34 
  635    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   635 
  643  C MoSU004R_D03_BE605054As02P005E03E091R1_026.ab1    22 
  651    MoSU004F_D03_BE605054As02P005E03E091F1_026.ab1   651 
Contig length: old 677, new 677

Contig length: old 677, new 677
New start: 0