No. words: 1397; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:676)  658  0.15 0.00 0.00  MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1        1   677 (30)  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   (13)   677     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   690 
   18    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1     5 
  183  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   508 
  187    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1   174 
  199  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   492 
  203    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1   190 
  235  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   456 
  247    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1   234 
  295  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   396 
  307    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1   294 
  327  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   364 
  359    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1   346 
  371  C MoSU004R_C04_BE605054Ld05P005E03E091R1_022.ab1   320 
  675    MoSU004F_C04_BE605054Ld05P005E03E091F1_022.ab1   662 
Contig length: old 720, new 720

Contig length: old 720, new 720
New start: 0