No. words: 1585; after pruning: 1559


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 14.4 (1,1:666)  647  0.00 0.00 0.00  MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1        1   663 (140)  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   (115)   667     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   782 
  135    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1    20 
  139  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   644 
  151    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1    36 
  283  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   500 
  295    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   180 
  299  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   484 
  319    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   204 
  339  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   444 
  343    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   228 
  399  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   384 
  467    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   352 
  471  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   312 
  507    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   392 
  511  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1   272 
  727    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   612 
  731  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1    52 
  763    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   648 
  771  C MoSU004R_E04_BE605054Ld07P005E03E091R1_023.ab1    12 
  775    MoSU004F_E04_BE605054Ld07P005E03E091F1_023.ab1   660 
Contig length: old 918, new 918

Contig length: old 918, new 918
New start: 0