No. words: 791; after pruning: 765


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:345)  325  0.29 0.00 0.00  MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1        1   346 (50)  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1   (49)   346     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1   395 
  257    MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1   208 
  265  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1   131 
  277    MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1   228 
  285  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1   111 
  289    MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1   240 
  297  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1    99 
  321    MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1   272 
  329  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1    67 
  345    MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1   296 
  357  C MoSU030R_F04_BE605054Td06P024E01P005E091R1_022.ab1    39 
  361    MoSU030F_F04_BE605054Td06P024E01P005E091F1_022.ab1   312 
Contig length: old 445, new 445

Contig length: old 445, new 445
New start: 0