No. words: 919; after pruning: 893


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 4.9 (1,1:293)  283  0.00 0.34 0.00  MoSU009F_A08_BE637663Ld03P015B03P015B091F1_064.ab1        1   291 (152)  C MoSU009R_A08_BE637663Ld03P015B03P015B091R1_064.ab1   (181)   295     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C MoSU009R_A08_BE637663Ld03P015B03P015B091R1_064.ab1   476 
  323    MoSU009F_A08_BE637663Ld03P015B03P015B091F1_064.ab1   141 
  359  C MoSU009R_A08_BE637663Ld03P015B03P015B091R1_064.ab1   118 
  367    MoSU009F_A08_BE637663Ld03P015B03P015B091F1_064.ab1   185 
  391  C MoSU009R_A08_BE637663Ld03P015B03P015B091R1_064.ab1    86 
  419    MoSU009F_A08_BE637663Ld03P015B03P015B091F1_064.ab1   237 
Contig length: old 625, new 625

Contig length: old 625, new 625
New start: 0