No. words: 919; after pruning: 893


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.6 (1,1:293)  279  0.34 0.00 0.34  MoSU009F_B08_BE637663Ld04P015B03P015B091F1_062.ab1        1   291 (153)  C MoSU009R_B08_BE637663Ld04P015B03P015B091R1_062.ab1   (182)   293     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C MoSU009R_B08_BE637663Ld04P015B03P015B091R1_062.ab1   475 
  326    MoSU009F_B08_BE637663Ld04P015B03P015B091F1_062.ab1   144 
  334  C MoSU009R_B08_BE637663Ld04P015B03P015B091R1_062.ab1   142 
  346    MoSU009F_B08_BE637663Ld04P015B03P015B091F1_062.ab1   164 
  443  C MoSU009R_B08_BE637663Ld04P015B03P015B091R1_062.ab1    33 
  451    MoSU009F_B08_BE637663Ld04P015B03P015B091F1_062.ab1   269 
Contig length: old 625, new 626

Contig length: old 626, new 626
New start: 0