No. words: 1415; after pruning: 1389


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:670)  648  0.00 0.30 0.15  MoSU008F_C05_BF201560As01P005G04G101F1_043.ab1        2   671 (38)  C MoSU008R_C05_BF201560As01P005G04G101R1_043.ab1   (35)   671     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU008R_C05_BF201560As01P005G04G101R1_043.ab1   706 
   66    MoSU008F_C05_BF201560As01P005G04G101F1_043.ab1    30 
   82  C MoSU008R_C05_BF201560As01P005G04G101R1_043.ab1   625 
   94    MoSU008F_C05_BF201560As01P005G04G101F1_043.ab1    58 
  186  C MoSU008R_C05_BF201560As01P005G04G101R1_043.ab1   521 
  190    MoSU008F_C05_BF201560As01P005G04G101F1_043.ab1   154 
  458  C MoSU008R_C05_BF201560As01P005G04G101R1_043.ab1   249 
  678    MoSU008F_C05_BF201560As01P005G04G101F1_043.ab1   642 
  686  C MoSU008R_C05_BF201560As01P005G04G101R1_043.ab1    21 
  690    MoSU008F_C05_BF201560As01P005G04G101F1_043.ab1   654 
Contig length: old 744, new 745

Contig length: old 745, new 745
New start: 0