No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:656)  530  0.72 0.36 0.00  MoSU008F_D05_BF201560As02P005G04G101F1_041.ab1        2   558 (0)  C MoSU008R_D05_BF201560As02P005G04G101R1_041.ab1   (14)   657    99 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C MoSU008R_D05_BF201560As02P005G04G101R1_041.ab1   671 
   41    MoSU008F_D05_BF201560As02P005G04G101F1_041.ab1    26 
  162  C MoSU008R_D05_BF201560As02P005G04G101R1_041.ab1   510 
  170    MoSU008F_D05_BF201560As02P005G04G101F1_041.ab1   155 
  398  C MoSU008R_D05_BF201560As02P005G04G101R1_041.ab1   274 
Contig length: old 671, new 671

Contig length: old 671, new 671
New start: 0 
S Change at: 37; seg lengths: entry 1, contig 1